PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00547.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 337aa    MW: 36467.9 Da    PI: 8.1853
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00547.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.51.7e-3944104262
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+
  Rsa1.0_00547.1_g00008.1  44 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 104
                              7899******************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-273796IPR003851Zinc finger, Dof-type
PfamPF027014.4E-3345102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.53748102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVVKPLEEIV TNTCPKPQSA AHTQQPPSVG AGGGGAERKA RPEKDQAINC PRCNSTNTKF  60
CYYNNYSLTQ PRFFCKGCRR YWTEGGSLRN IPVGGGSRKN KRSHSSSVSS SSDINTNHSD  120
STQPATKKHH SDHHHLMSIS QQRLTGQNPK FFETTQQDLN LGFPPHGLIR SNFTDLIHNI  180
GNNNIKSTNN PLLSSSCSST SAMATSSLDL IRNNNSNNGS SSFMGFPVQN QDPTSGGFSM  240
QDHYKPCNSN TTLLGFSLDH HHNNGFHGGF QEGEEAAGDD VNGRHLFPFE DLKLPVSSSS  300
ATINVDINDN QKRASGGDAS ATSGGYWTGM LSGGSWC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3580880.0DQ358088.1 Brassica juncea sporocyteless (SPL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137657.10.0PREDICTED: dof zinc finger protein DOF4.6
RefseqXP_013710275.10.0PREDICTED: dof zinc finger protein DOF4.6-like
SwissprotQ8LAP81e-169DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A0D3A5U10.0A0A0D3A5U1_BRAOL; Uncharacterized protein (Fragment)
TrEMBLM4DB980.0M4DB98_BRARP; Uncharacterized protein
STRINGBra013758.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-129Dof family protein